Paying your staff the COVID-19 Short-Term Absence Payment

How to pay the COVID-19 Short-Term Absence Payment to your employees, and manage GST and tax around this.

Paying wages to staff

You must pay your employees any amount required by their employment agreement and employment legislation. The Short-Term Absence Payment requirements do not remove or reduce this obligation.

If you are not required to pay your employee while they are waiting for COVID-19 PCR test results, you must use the Short-Term Absence Payment to either:

  • pay your employee their ordinary wages or salary if their usual wages or salary are less than the payment rate. Any difference should be used for the wages or salary of other staff, or
  • pay your employee at least the full amount of the Short-Term Absence Payment if their usual wages or salary are more than the payment rate.

Visit the Employment NZ website for information about employment law:

GST and tax


Employers do not have to pay GST on the Short-Term Absence Payment.

Income tax

Employers / Businesses in receipt of the Short-Term Absence Payment must pass that payment onto their employees and make the usual PAYE/PAYG deductions when passed on (refer PAYE / PAYG below). Where it is passed on in full, the payment is “excluded income” for income tax purposes for the employer / business, meaning you don’t pay income tax on the Short-Term Absence Payment you receive from us. Note you also don’t get an income tax deduction for the portion of wages paid using the Short-Term Absence Payment. By passing on through wages, the Short-Term Absence Payment is subject to income tax in the employees' personal income tax return.

When the full payment is not passed on, any excess amounts will be taxable income to the employer / business. You will need to include this in your income tax return.

If you're self-employed, you need to pay income tax on the Short-Term Absence Payment in your IR3, as it's a payment to replace a loss of earnings. Include this amount in the “Government Subsidies” field / keypoint.


Employers are required to deduct the usual employer deductions, eg, PAYE / PAYG, Student Loan, KiwiSaver, on the Short-Term Absence Payment passed on to the employee as it's paid to them as part of their normal wages.

The amount paid to the employee is included with their other wage payments to determine the total gross earnings (the payment is not grossed up). For example, if the employee earned gross wages of $500 and you paid them a Short-Term Absence Payment of $359, their total gross earnings are required to be included in the relevant PAYE return. This would be $859. The usual employer deductions are made from this amount.

You can agree with your employee when the Short-Term Absence Payment is paid. However, if the payment is made outside of their usual pay cycle, this might have adverse tax implications for your employees, such as:

  • they may be taxed at the wrong rate
  • it may impact Working for Families entitlements.